Loftee github
WitrynaGitHub - Loftee/godfather-bios Loftee / godfather-bios Public master 1 branch 0 tags Code 6 commits Failed to load latest commit information. public src .gitignore … Witrynavep_loftee This image supports the Loftee plugin by adding samtools and DBD-SQlite perl module on top of the official VEP image. It is available in Dockerhub at …
Loftee github
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Witrynakonradjk/loftee is licensed under the MIT License A short and simple permissive license with conditions only requiring preservation of copyright and license notices. Licensed works, modifications, and larger works may be distributed under different terms and without source code. Permissions Commercial use Modification Distribution Private use Witryna1 lis 2024 · loftee Notifications Fork Star Wiki Security New issue WARNING: Failed to compile plugin LoF: can't open! #60 Open scha36 opened this issue on Nov 1, 2024 …
Witryna4 lis 2024 · Contribute to LoFieee/LoFie.github.io development by creating an account on GitHub. WitrynaDocker image for VEP which supports Loftee Plugin. Contribute to wtsi-hgi/vep_loftee development by creating an account on GitHub.
Witrynaloftee/LoF.pm at master · konradjk/loftee · GitHub konradjk / loftee Public master loftee/LoF.pm Go to file Cannot retrieve contributors at this time 613 lines (515 sloc) … Witryna17 sty 2024 · The file loftee_splice_utils.pl is looking for the ese.txt and other files in the vep/loftee/ directory which isn't where you have your loft data stored. As I am working on a HPC that I can't add files into the …
Witryna22 cze 2014 · On Fri, Oct 10, 2014 at 6:48 AM, Brad Chapman [email protected] wrote: Luca and Paul; The new samtools release no longer supports razip so I re-prepped these ancestral fastas with bgzip and their new indexing approach. These are now downloaded and used instead of the razip ones when …
Witryna7 lis 2024 · konradjk / loftee Public Fork 48 Star 143 Code Issues Pull requests Actions Projects Wiki Security Insights New issue hg38 files #38 Closed zhouhufeng opened this issue on Nov 7, 2024 · 8 comments zhouhufeng commented on Nov 7, 2024 to join this conversation on GitHub . Already have an account? hush of nightWitryna4 sie 2024 · on Aug 4, 2024. Yep, those warnings are fine. But note that we strongly discourage the use of --fork as it doesn't play well with the sql databases needed for loftee. konradjk closed this as completed on Aug 4, 2024. Author. maryland physicians care timely filing limitWitryna13 gru 2024 · the vep runs ok and annotates variants with maxEntScan scores, but loftee does not run as it fails to compile; WARNING: Failed to compile plugin LoF: Can't open me2x3acc1! hush olivia culottesWitryna8 cze 2024 · LoFTK has been developed to work under the environment of two cluster managers; Simple Linux Utility for Resource Management (SLURM) and Sun Grid Engine (SGE). Each cluster manager (SLURM/SGE) has LoFTK verison for installation. Look at Instillation and Requirements in the wiki. Requirements maryland physicians care provider listWitryna19 sie 2024 · Installed the loftee and other plugins at new path and passed that path to vep via --dir_plugins ... still no success !!! I hardcoded the path to the required file in loftee_splice_utils.pl ... still … hush o matic exhaust reviewWitrynaFlags loftee_path, gerp_bigwig, human_ancestor_fa, and conservation_file are set automatically based on the selected assembly. process.container -- full path to the Singularity image file (see step 1.1.). executor.$slurm.queueSize -- maximal number of SLURM jobs to submit at once. Run pipeline: maryland physicians care providers numberWitryna6 paź 2016 · Hi, The LofTee plugin has a missing dependency when downloading it with the automated installer. current config is # LOFTEE # Requires LoFtool_scores.txt file as first param (available in VEP_plugi... maryland physicians care mailing address